Category Archives: Uncategorized

Pystan – The model, differences between two groups

In the last post we talked about the data set up and writing the model for comparing crop yields from two different counties in England. This will run the model for us. And now we can look at the model output. Right … Continue reading

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Pystan – Setup, differences between two groups

Often I stumbled across data where I am looking at two groups of things. In some of our recent work our group was looking at bacteria found in caves and bacteria found above ground. Granted there is a lot more … Continue reading

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Scratch spaces

I get torn between putting out work here, on github and on google+ . I think each site serves a slightly different purpose. Github for code, google+ for a narrower audience, and here maybe for a scratch space for writing … Continue reading

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Primers working!!!

So I am wrangling with getting these literature based PKS I primers working for my PhD project. Finally success!!! PKS I Primers degKS2F 5’-GCIATGGAYCCICARCARMGIVT  degKS2R 5’- GTICCIGTICCRTGISCYTCIAC 760 bp fragment Schirmer, A., R. Gadkari, C. D. Reeves, F. Ibrahim, E. F. DeLong, … Continue reading

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Returned from Parashants

Just got back from an amazing time in the Parashants! Will post an update shortly.

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Figshare – GC content compared to genome size

For those that are interested in opensource science I am over on figshare as well. Just posted GC content and genome size plot from some data I mined from NCBI awhile back. http://figshare.com/articles/GC_Content_vs_Genome_Size_of_4231_Bacteria_Genomes/97275    

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Sunday: A Swarm of Cave Pools

I like this sketch I did. This shows the spatial relationship between several cave pools in cross section to the geologic structures in the area. The numbers with the arrows are the strikes of the flowstone and rimstone dams. The … Continue reading

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