Tag Archives: bioinformatics

Figshare – GC content compared to genome size

For those that are interested in opensource science I am over on figshare as well. Just posted GC content and genome size plot from some data I mined from NCBI awhile back. http://figshare.com/articles/GC_Content_vs_Genome_Size_of_4231_Bacteria_Genomes/97275    

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Stubborn trees

Sometimes you may have a Newick tree formatted a little differently and these can cause problems for the newick parser in Biopython. One way around this (if you keep getting errors) is to try this version of the code: from … Continue reading

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A little bioinformatics (Bacteria)

The past week or so was a pretty heavy bioinformatics project. Our lab (website still under construction) uses a bioinformatics first approach to doing a lot of our research. One of the many parts to this project is comparing phylogenetic … Continue reading

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